Scaffold Ga0126343_10026253

Overview

Basic Information

• Taxon OID: 3300010035
• Scaffold ID: Ga0126343_10026253
• Source Dataset Name: Coral microbial communities from Lord Howe Island, Old Settlement Bay, Australia - Cyphastrea 2 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3978
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Acroporidae → Acropora (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Lord Howe Island, Old Settlement Bay, Australia
• Coordinates
  • Lat. (^o): -31.55
  • Long. (^o): 159.0833
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001193	Metagenome / Metatranscriptome	751	Y
F002131	Metagenome / Metatranscriptome	590	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126343_100262534	F002131	GAG	VPEMQKRLGVTIFVSDIKRVGNYPDFDKLAHVIQYGLQGFIVKNIEGELTEANDLSIIL*
Ga0126343_100262535	F001193	AGGA	MAIAIAFPGFNELGRTVTPIFLLMDHFLYQFSAFSEKIKKIYRLEV*