NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126336_10471051

Scaffold Ga0126336_10471051


Overview

Basic Information
Taxon OID3300010032 Open in IMG/M
Scaffold IDGa0126336_10471051 Open in IMG/M
Source Dataset NameCoral microbial communities from El Islote,Puerto Morelos, Mexico - Siderastrea C C metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)646
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameEl Islote,Puerto Morelos, Mexico
CoordinatesLat. (o)20.9267Long. (o)-86.8313Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066444Metagenome / Metatranscriptome126N
F093248Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0126336_104710511F093248N/AMLTRIVAKQAKTTKVKNKFVNGKKVQKNTQLSFW*
Ga0126336_104710512F066444N/AMKMLMFFLAKCVRDAVKTMAVDRKNQKALALLYLASKPLAKSCELKQCAEFEQNPQGKFELFA*

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