NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126336_10131220

Scaffold Ga0126336_10131220


Overview

Basic Information
Taxon OID3300010032 Open in IMG/M
Scaffold IDGa0126336_10131220 Open in IMG/M
Source Dataset NameCoral microbial communities from El Islote,Puerto Morelos, Mexico - Siderastrea C C metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1670
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameEl Islote,Puerto Morelos, Mexico
CoordinatesLat. (o)20.9267Long. (o)-86.8313Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045538Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0126336_101312202F045538N/AMQRLRRQLPFLRSVLQEANRSKRQELLQHANADQINAVSELALNFLKNKIPVTPPILAKLRPYKKVLRDLGRRRHSVKKRCQWLVQQKGRGLFQGLHHVLCQCAR*

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