Scaffold Ga0126336_10000954

Overview

Basic Information

• Taxon OID: 3300010032
• Scaffold ID: Ga0126336_10000954
• Source Dataset Name: Coral microbial communities from El Islote,Puerto Morelos, Mexico - Siderastrea C C metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13807
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Acroporidae → Acropora → Acropora millepora (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: El Islote,Puerto Morelos, Mexico
• Coordinates
  • Lat. (^o): 20.9267
  • Long. (^o): -86.8313
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000221	Metagenome / Metatranscriptome	1543	Y
F017439	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126336_100009543	F000221	AGGTGG	VFPWMHSLSVIILMKATEQYFPVVLFIMLYKVVLTFESVDEIIKCDYSNESY*
Ga0126336_100009549	F017439	GAG	MKATEQYFPMVLFIMLYKVMLTFESVDEILKCDHSSQSHWTVLSCGTVICAV*