NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126337_10013714

Scaffold Ga0126337_10013714


Overview

Basic Information
Taxon OID3300010031 Open in IMG/M
Scaffold IDGa0126337_10013714 Open in IMG/M
Source Dataset NameCoral microbial communities from La Bocana,Puerto Morelos, Mexico - Diploria C A metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5382
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameLa Bocana,Puerto Morelos, Mexico
CoordinatesLat. (o)20.8777Long. (o)-86.843Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017438Metagenome / Metatranscriptome240Y
F019780Metagenome / Metatranscriptome227Y
F100364Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0126337_1001371410F019780N/ALDDLKEQERDLQRQNEIDRAIIQDKNASLSDKEAAEGRVAERNEEIARFQTQIAERERTRPLLERIKEIFKKYGVTLASILLAAGVPIGVVVGSITNALKATGKALGKGIKDIGAKLGSLLPGLIGSIASFLFKAAGQAIGFLAEHSWLLILAVVAFLFEKYLKKRR*
Ga0126337_100137142F100364N/AVKGRTGELVNLAFSARHIGISVWVLTQKMTAITAPFRENVAAIVLFYTRSAKTTKAIFDDYAGELSQDAYKGLISKLKERKFSYLVFSLRHPYGLSYFE*
Ga0126337_100137144F017438GAGMNMTKFYTGDNFGLVIDMRSMADQSMHDSGTRIVNSTDGFQLEIEREAKGSGKVNCHIYVISDSEFNIENRQLESVQC*

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