Scaffold Ga0126337_10013714

Overview

Basic Information

• Taxon OID: 3300010031
• Scaffold ID: Ga0126337_10013714
• Source Dataset Name: Coral microbial communities from La Bocana,Puerto Morelos, Mexico - Diploria C A metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5382
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: La Bocana,Puerto Morelos, Mexico
• Coordinates
  • Lat. (^o): 20.8777
  • Long. (^o): -86.843
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017438	Metagenome / Metatranscriptome	240	Y
F019780	Metagenome / Metatranscriptome	227	Y
F100364	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126337_1001371410	F019780	N/A	LDDLKEQERDLQRQNEIDRAIIQDKNASLSDKEAAEGRVAERNEEIARFQTQIAERERTRPLLERIKEIFKKYGVTLASILLAAGVPIGVVVGSITNALKATGKALGKGIKDIGAKLGSLLPGLIGSIASFLFKAAGQAIGFLAEHSWLLILAVVAFLFEKYLKKRR*
Ga0126337_100137142	F100364	N/A	VKGRTGELVNLAFSARHIGISVWVLTQKMTAITAPFRENVAAIVLFYTRSAKTTKAIFDDYAGELSQDAYKGLISKLKERKFSYLVFSLRHPYGLSYFE*
Ga0126337_100137144	F017438	GAG	MNMTKFYTGDNFGLVIDMRSMADQSMHDSGTRIVNSTDGFQLEIEREAKGSGKVNCHIYVISDSEFNIENRQLESVQC*