Scaffold Ga0126337_10000009

Overview

Basic Information

• Taxon OID: 3300010031
• Scaffold ID: Ga0126337_10000009
• Source Dataset Name: Coral microbial communities from La Bocana,Puerto Morelos, Mexico - Diploria C A metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54064
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (19.51%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: La Bocana,Puerto Morelos, Mexico
• Coordinates
  • Lat. (^o): 20.8777
  • Long. (^o): -86.843
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017439	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126337_1000000936	F017439	GAG	MTIQMKVIEQYFYVVLFIMLHKVALTFKSVDETLVCDHSNESY*AVLSCGTVYYAEQGGSNV*