NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126338_10035962

Scaffold Ga0126338_10035962


Overview

Basic Information
Taxon OID3300010030 Open in IMG/M
Scaffold IDGa0126338_10035962 Open in IMG/M
Source Dataset NameCoral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2990
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NamePetempiche,Puerto Morelos, Mexico
CoordinatesLat. (o)20.9047Long. (o)-86.8366Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014703Metagenome / Metatranscriptome260Y
F040466Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0126338_100359623F014703GAGGMENVAGEQGLALQQLFPYKSFYSFKNSDHHKISFFNDGGLKLGHFDIFDKLFPFLAFLKL
Ga0126338_100359624F040466GAGVREYARIYDVRMAQFVLKVEKLSHIIGARESRDLRSPSPIMALAIT*

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