NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126338_10031592

Scaffold Ga0126338_10031592


Overview

Basic Information
Taxon OID3300010030 Open in IMG/M
Scaffold IDGa0126338_10031592 Open in IMG/M
Source Dataset NameCoral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3288
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NamePetempiche,Puerto Morelos, Mexico
CoordinatesLat. (o)20.9047Long. (o)-86.8366Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012646Metagenome / Metatranscriptome278Y
F021048Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0126338_100315921F021048N/AMVVLTIVTQQNRGTIYFEEPLPKVHFMKLISCSLYNNWDTLKREGSATSGDNNDAKNITLPVAQVLPGHYNLERIALEIGNLFAKYSFKLETEINHPLGQLVIKNSELRPVELDRDLAGLLGIGRKLKFINFVKRLTASTTYFIHCDLLDKQKNLFNGKRSDILASFDVKGKPYEKVSYQASPQQVLRNCSTDEFIN
Ga0126338_100315925F012646AGGCGGMKLGVNSKVNPDTKKAGLKIMAGGPSKINPPNSHPSNPIHKAATAESGRGIPPHRKPSSSETQQTQPPVEKREPEAPDKTSQHEINKTAVIVGVVGLSALLLMAWR*

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