Scaffold Ga0126338_10010975

Overview

Basic Information

• Taxon OID: 3300010030
• Scaffold ID: Ga0126338_10010975
• Source Dataset Name: Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6415
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Petempiche,Puerto Morelos, Mexico
• Coordinates
  • Lat. (^o): 20.9047
  • Long. (^o): -86.8366
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020846	Metagenome / Metatranscriptome	221	Y
F056319	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126338_1001097510	F020846	AGG	MSVPENLRPTYNEKTFGAMKAKRTVNRITFGRTEANPGDTLYVSVPKLNEDEVLVPGSLALVFDIYLSGGHANNFLVHNVTWALVDHLVVNFGGTILQDTLGHDIYKIFEDLFLSQEERDLMALEGIQSEDLCKIRSGTGDKKTSGVDAENKLNEVYGSNYRIRLDHQIVTDNGVFYPKALYNDLKFEITLAPASQVVRGSDPTKLKYRLTNIQLEYRIIRSKSLADEALSVYTSGKEFAYDHVMRSKVVFLRHEAQHQSRRPKKIAQSHSPPFCRTV*
Ga0126338_1001097515	F056319	N/A	ALPGDPPFSQFNNHYDVASYKRLCSEFGIDPSSDFRFTHGENHGVGSVYVYASGPTKTDYKYPGWNKFSDEGGKAIKGNLIYFIEPGAYGDTQADWFAPNAASGLKQAGLARINQSIEAFIYYILDAQVNVCSSILGSGGRAKEAQSEFLVLVEDAIRQPDLAESVQRYQPAVDQAKVRLNLAVAPMA*