Scaffold Ga0126338_10003454

Overview

Basic Information

• Taxon OID: 3300010030
• Scaffold ID: Ga0126338_10003454
• Source Dataset Name: Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11093
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Petempiche,Puerto Morelos, Mexico
• Coordinates
  • Lat. (^o): 20.9047
  • Long. (^o): -86.8366
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001105	Metagenome / Metatranscriptome	776	Y
F003767	Metagenome / Metatranscriptome	469	Y
F012646	Metagenome / Metatranscriptome	278	Y
F019780	Metagenome / Metatranscriptome	227	Y
F025647	Metagenome / Metatranscriptome	200	Y
F085124	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126338_1000345413	F019780	AGG	MHHMVVKELTLTAIFIAAGTTIGTVIGVLTRGLNATGKALGNGLKELGKKLLSILPRLIGSIVSFLFKAAGQVVRFLAKHTWLLILAVVAFLLEQFLKQR*
Ga0126338_1000345414	F012646	GAG	MESAITQPDLAVSVQRYQLVVDQAKVRLNLAVAPMAWLMPAQMIINTASTIGYNNKLKQAVSGMKLGVNNEVNPETKKAGLKLMAGGPSKINPPNSHPSNPIHKAATAESRKPASSETQQAQVQKIESETPDKTSQHKINKTAVIVGVVGLSALLFMAWR*
Ga0126338_1000345417	F085124	N/A	LNTILFVEYKMVVLTIVKQQNGGTISFEEPIPKVHFMKLISCSLYNSWDTLKKEGSDSLGDKNKDRTLSVSKITPGNYNLESMAKQIDGLFDKYHYKQLETEINQPVGQLVIRNYGAKPIKLDHDLANLLGIGRKLDLNIRKTAYISNDIFYSL*
Ga0126338_100034544	F003767	N/A	MASIVIMVGGAVLNATAFIGGNYLARALGGGDKAALEEKKSHNKALEDYQAAYTKYTRDRTQLLDWIATNAQTKEQAKQNFTNTDYAFKLYNQAYPDEQVVPPKEPEFSDFYQPSEQQKKGELMLVGAGALALGYAAFWFL*
Ga0126338_100034546	F001105	N/A	MSDNKLVKVVIEAATLMGLAVGIGWAAKKVVKENCTSDPSNSLMNYVKFTAVIAGSISLKQYLEDQKILPTSV*
Ga0126338_100034549	F025647	N/A	MAGEEATLAEVMNLLETEPESSSCPTGGLVPTAPRPDIPALREQLAVLVSTGKAKEAIAVQLAHEQVKRLSNKEVEKFAKRYETYVGSKTTESLIDSFIFLANKVVGMAVKIKDIDAYQKELRNNYILNKQLSNLAGNLALKCGQFLAAANVALITTKHIDFSPQLQSHPSRDEYRYPLEGIDEVPGSATAK*