NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126338_10003454

Scaffold Ga0126338_10003454


Overview

Basic Information
Taxon OID3300010030 Open in IMG/M
Scaffold IDGa0126338_10003454 Open in IMG/M
Source Dataset NameCoral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11093
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (27.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NamePetempiche,Puerto Morelos, Mexico
CoordinatesLat. (o)20.9047Long. (o)-86.8366Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001105Metagenome / Metatranscriptome776Y
F003767Metagenome / Metatranscriptome469Y
F012646Metagenome / Metatranscriptome278Y
F019780Metagenome / Metatranscriptome227Y
F025647Metagenome / Metatranscriptome200Y
F085124Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0126338_1000345413F019780AGGMHHMVVKELTLTAIFIAAGTTIGTVIGVLTRGLNATGKALGNGLKELGKKLLSILPRLIGSIVSFLFKAAGQVVRFLAKHTWLLILAVVAFLLEQFLKQR*
Ga0126338_1000345414F012646GAGMESAITQPDLAVSVQRYQLVVDQAKVRLNLAVAPMAWLMPAQMIINTASTIGYNNKLKQAVSGMKLGVNNEVNPETKKAGLKLMAGGPSKINPPNSHPSNPIHKAATAESRKPASSETQQAQVQKIESETPDKTSQHKINKTAVIVGVVGLSALLFMAWR*
Ga0126338_1000345417F085124N/ALNTILFVEYKMVVLTIVKQQNGGTISFEEPIPKVHFMKLISCSLYNSWDTLKKEGSDSLGDKNKDRTLSVSKITPGNYNLESMAKQIDGLFDKYHYKQLETEINQPVGQLVIRNYGAKPIKLDHDLANLLGIGRKLDLNIRKTAYISNDIFYSL*
Ga0126338_100034544F003767N/AMASIVIMVGGAVLNATAFIGGNYLARALGGGDKAALEEKKSHNKALEDYQAAYTKYTRDRTQLLDWIATNAQTKEQAKQNFTNTDYAFKLYNQAYPDEQVVPPKEPEFSDFYQPSEQQKKGELMLVGAGALALGYAAFWFL*
Ga0126338_100034546F001105N/AMSDNKLVKVVIEAATLMGLAVGIGWAAKKVVKENCTSDPSNSLMNYVKFTAVIAGSISLKQYLEDQKILPTSV*
Ga0126338_100034549F025647N/AMAGEEATLAEVMNLLETEPESSSCPTGGLVPTAPRPDIPALREQLAVLVSTGKAKEAIAVQLAHEQVKRLSNKEVEKFAKRYETYVGSKTTESLIDSFIFLANKVVGMAVKIKDIDAYQKELRNNYILNKQLSNLAGNLALKCGQFLAAANVALITTKHIDFSPQLQSHPSRDEYRYPLEGIDEVPGSATAK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.