Scaffold Ga0126338_10000316

Overview

Basic Information

• Taxon OID: 3300010030
• Scaffold ID: Ga0126338_10000316
• Source Dataset Name: Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24367
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Petempiche,Puerto Morelos, Mexico
• Coordinates
  • Lat. (^o): 20.9047
  • Long. (^o): -86.8366
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043216	Metagenome / Metatranscriptome	156	Y
F071955	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126338_100003161	F071955	GGA	MDEFIGKDEAFVEQWLVRQELEKLADVFKGVFPQF*
Ga0126338_1000031617	F043216	GAGG	MSKDKYPSIFSPKMEAIVFIILQIFFATRAVLKIGEYSRIFPSLSWGIFGHVTCLDQLRASENI*