Scaffold Ga0130028_100090

Overview

Basic Information

• Taxon OID: 3300010023
• Scaffold ID: Ga0130028_100090
• Source Dataset Name: Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Duke University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4374
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming
• Coordinates
  • Lat. (^o): 44.53408
  • Long. (^o): -110.7979

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0130028_10009010	F002795	AGGA	MRRIRMPVTTGLVLHGLVAAYREFISRKDGKVYRIVTVYGDLVVGEDVLCRVDGYDVFVDSPSYARGEMVTFPARLQFVRDSSGRPAVRLYVYEGVR*
Ga0130028_10009011	F002372	AGGGGG	MPTRKEDSLWLVVHRRSAHLRALLDGLDGVDIGVTYELDYYPYAIVELLRVRDDAPPLVLRSVYISANRQWEYHSEYTLRVVEAALQLVEEYRADPSLGGAEGV*
Ga0130028_1000902	F000855	GAGG	MDWLEDFFSKVVSWFDERAANIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS*
Ga0130028_1000903	F001381	GAG	MQYVIAALYVLVWLALAAAAALWLPVWALPVALVQLAVAYVMVRSWLTAAAGGDDGA*
Ga0130028_1000904	F000642	N/A	LGARGALARWAVQEISIALAICAVGAAVWYMRRREASGRVHGWLVLYDDLGGWRALPAVYADSGIVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVAGLQALVAQILALVGDK*
Ga0130028_1000905	F002978	AGG	MSSVRDWRVTVVPWADRRLWFVQARRGRRVVWGIVYDADDPDSVALARRAIATLRAASADCSALPHPLPGIAPPGA*
Ga0130028_1000907	F004024	N/A	MVEVTMHSERDYLRQPSLLNDDDMMFLDARATLAAALSRAVVGYSDPRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER*
Ga0130028_1000909	F002229	GGAGG	MMVTLLTFDGVEEVDYVPSDLEIRASLGDSGLYGMVLNGVTWMRLVSGVGWWTVVCNRRVTVTLAAVGWCWVMDGLGNRGYWSPALACVPAEVRALCGGCVQDEDEED*