Scaffold Ga0105139_1036979

Overview

Basic Information

• Taxon OID: 3300009995
• Scaffold ID: Ga0105139_1036979
• Source Dataset Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 814
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location

• Location Name: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000285	Metagenome / Metatranscriptome	1374	Y
F010812	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105139_10369791	F010812	N/A	MCFVLFGFLGPFGGLTILGAKRAELEQKFVPRSRVGIFRNERTRSIPVDPKLIF
Ga0105139_10369792	F000285	N/A	IWVHLGPFGCLTKLGAKRAELVQKFVPRCRVRIFRNEHIRSAPLDPKLMFWFVSYYLGAFGTVWLPYKTQCKTGRTSAKVRARSRVGIFHNERTRTIPLDPKQMFLCVSYYLGAFWAVWLPYETRCKMCPKSVKVRTTKLCQNFSQRTCPIQPIGP*