Scaffold Ga0105131_120755

Overview

Basic Information

• Taxon OID: 3300009989
• Scaffold ID: Ga0105131_120755
• Source Dataset Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 648
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location

• Location Name: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002578	Metagenome / Metatranscriptome	546	Y
F014696	Metagenome / Metatranscriptome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105131_1207551	F002578	GGAG	MSAPDPPHWILNTCFGVFRTICVHLGPLGCLTKLGAKRSELVQKFVRRSRVGVFHDERTRSTPLDPKLMFCCV
Ga0105131_1207552	F014696	AGG	MVANAPKRYEMQQNMSLASNGVDRVLSLRKIQMRLRGTNFCTSSARFAPSFVRQPNSPQ