Scaffold Ga0105131_102014

Overview

Basic Information

• Taxon OID: 3300009989
• Scaffold ID: Ga0105131_102014
• Source Dataset Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1364
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location

• Location Name: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013855	Metagenome / Metatranscriptome	267	Y
F072997	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105131_1020141	F013855	N/A	MQQKLSLGSNVVDWLRSL*KHPTRLCGTNFPFCTEFRAVTKWSQMHPNTMKRNKR*VWGPMGSIGCVRCENIRRDFVARTFALIAPVRPILHRVYCRNKMLPNAPKHYETHHNMSLGSDAVDWADLLQRILLQLCGLNFCFNCNSSA*FEPSIVKQRNGPKSTQTQRNKTKHDFRFQWGWVNCSRCEKFGHDFVA*TFTLIAPVQPILQRVSCSNEMVPDAPKHYETQQKMSLGSNGVDW
Ga0105131_1020142	F072997	N/A	VRCENIRRDFVARTFALIAPVRPILHRVYCRNKMPPNAPKHYETHHNMSLGSDAVDWAVLLQLCGLNFCFNCNSSS*FEPSIVNQRNGPKCTQTLRNKTKHDFRFQWGWISCIRCEKFGNDFVA*TFALIAPVQPISHRVSCSNEMVPNAPKHYETQQKLSLGSNGVDQVHSLQKLPTQVRGTIF*INWTISAHFALSLLP*