Scaffold Ga0105036_127872

Overview

Basic Information

• Taxon OID: 3300009985
• Scaffold ID: Ga0105036_127872
• Source Dataset Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_101 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 510
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Endophytes → Unclassified → Switchgrass Leaf → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location

• Location Name: USA: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000392	Metagenome / Metatranscriptome	1188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105036_1278721	F000392	N/A	KYKSPYHIEMGTYVLIDLL*AGGSVAPSQPTSLR*N*AIFAQTCSTCLEGPYRKDSSSAHPCRAIDRA*EPRIPSPCSLKAITHATGSKIGSSRSRWNRGTEYYPVGMKTHIEYPDIFF*KYNSPYHIEMGTYVLIDLL*EGGSVAPAQPTSLR*N*VIFSQTCSTCLE