NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133780_1004569

Scaffold Ga0133780_1004569


Overview

Basic Information
Taxon OID3300009967 Open in IMG/M
Scaffold IDGa0133780_1004569 Open in IMG/M
Source Dataset NameTermite gut microbial communities -laboratory nest Belgium. Combined Assembly of Gp0151224, Gp0151225, Gp0151226, Gp0151227
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLuxembourg Institute of Science and Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2455
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Multi-Omic Termite Study

Source Dataset Sampling Location
Location NameBelgium
CoordinatesLat. (o)50.814939Long. (o)4.383499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069311Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0133780_10045691F069311N/AMLVITVQTTIPVKEIDDRITAAVFFVASVLWDLKFHFGSVFKIMNLE*

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