NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131077_10000469

Scaffold Ga0131077_10000469


Overview

Basic Information
Taxon OID3300009873 Open in IMG/M
Scaffold IDGa0131077_10000469 Open in IMG/M
Source Dataset NameActivated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112179
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)92 (75.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community Analysis In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location NameTai Wan
CoordinatesLat. (o)24.0Long. (o)120.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011832Metagenome / Metatranscriptome286Y
F021078Metagenome220Y
F031298Metagenome183Y
F035236Metagenome172Y
F078364Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0131077_10000469121F035236N/AMNLLLGLPFIFVVWGLLLPLLFLDGAVAYLTFLWQNPRLVAALVVNLGVVSYWLARRLSQALLLRSTGAKLRATHEPP*
Ga0131077_1000046919F078364AGGAGGMALFERFHLSQEEVEARLKRALTGDPARGEIGLLAALSANKYDDVQARLARDATLGADLRELVAEHLQKSRARWETRKAWSVTLPLPIWDEYARESRITGRSITECLVAAIRRDYERRRGTLEPLETLDQNVRAFHAAATQLLQEARQVLDRVGPLQEIGMRLARIESVIGGQVRR*
Ga0131077_1000046921F021078GGAGGMEPKKEEVGVRLDDGLQERVGAYAGREGLTVGEAISALLYLGLEFAERQRTGLKEDIEDLQRELRDLRQMVDVLGPAALGAQRILAHWAAQTGGLRVSEDELLAEGRLVAEEEWQGQLAERGLFSPGALTGKLEG*
Ga0131077_1000046924F011832AGGAGGVTRRRIQPKAAVELETVTLRLPAQLVRAVEQYAKYLGGSTDRTHVIAQALEIALAQDKDFQKSLTTKPAATVAGPVRATA*
Ga0131077_1000046925F031298AGGAGMVRGLRVVFSPNPVSRVLYSYRVPEPGTRGTVTAARVAGGLRTYLDGPGGGLVYVEWDGDGLVCGVSMGDLKLEPAEAEPAS*
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