Scaffold Ga0130079_13765552

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0130079_13765552

Scaffold Ga0130079_13765552

Overview

Basic Information
Taxon OID	3300009872 Open in IMG/M
Scaffold ID	Ga0130079_13765552 Open in IMG/M
Source Dataset Name	Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Switchgrass. Combined Assembly of Gp0148675, Gp0148676
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	U.S. Department of Energy (DOE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1000
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Cow Rumen Metatranscriptome

Source Dataset Sampling Location
Location Name	University of Illinois at Urbana - Champaign, Illinois, USA
Coordinates	Lat. (^o)	40.096	Long. (^o)	-88.2315	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004857	Metagenome / Metatranscriptome	421	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130079_137655521	F004857	N/A	VLDELNKFRSSPKSIQHQCEVIRKGFSRIKAGDPFLNDIDVFVKKLDSMKQLPQLEFNDVLSEAAKRELPSFRHKNYLKYRRSDKVKGIVPEYYLVASPALAADDGADDPINVLTKILLDKQDPLKEGRDILCDPKFTQIGIAHEIYDEENKIIMIFATQYIDDEPKFELPYGNITELKKAFDILDEDEDEILRMDEIMEALHEMEFNKTDPTLYSIFKDLANRDRCSWPKFAYYANLRMTDRETREGLLTIFNLFIDNPDKNTITFETFRKICREIECGLSDAQLKEIMEAATINGNEITFKEFEQYMAVAPEANK*

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