Scaffold Ga0130077_11123084

Overview

Basic Information

• Taxon OID: 3300009871
• Scaffold ID: Ga0130077_11123084
• Source Dataset Name: Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Rumen Fluid.Combined Assembly of Gp0148671, Gp0148672
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1527
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Cow Rumen Metatranscriptome

Source Dataset Sampling Location

• Location Name: University of Illinois at Urbana - Champaign, Illinois, USA
• Coordinates
  • Lat. (^o): 40.096
  • Long. (^o): -88.2315

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015685	Metagenome / Metatranscriptome	252	Y
F023770	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130077_111230842	F023770	GGAG	MAKVEFDPGIDSVRGILMGTDPFYIRRYPGREGVMHIVQARPNRSDHIPSEAEAHTRIVFAQKYGHEKHLAFLERKFKNQLTINFID*
Ga0130077_111230843	F015685	N/A	MAKITLHGMFARVRGKFNKSETLYFKGCPCKQEQLGVDLLNPSKANHAKNILSQEALKDAAQAAQTALADPTERATLEAGFAAQKKYKSLFSYTVAQKYVKPNFA*