Scaffold Ga0131092_10001727

Overview

Basic Information

• Taxon OID: 3300009870
• Scaffold ID: Ga0131092_10001727
• Source Dataset Name: Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47342
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (60.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Community Analysis In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location

• Location Name: Tai Wan
• Coordinates
  • Lat. (^o): 25.0
  • Long. (^o): 121.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026047	Metagenome / Metatranscriptome	199	Y
F035236	Metagenome	172	Y
F038748	Metagenome / Metatranscriptome	165	Y
F045207	Metagenome / Metatranscriptome	153	Y
F059117	Metagenome	134	Y
F066913	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131092_1000172727	F038748	GGAG	MNKRPTVALAVAFLLGALLVASVPAFAQDPFAGLTNTLNSSARTWAAALMLVGALIAGGAIMMGSRESGHHTRNFLFGAIFLVLAGAGLAIYDRVAGMLN*
Ga0131092_1000172728	F026047	N/A	MTRRQSECFRNLDDPLKVFSVLTVKSCGLVLLFYGGTVAAELLFGLFSLLFGGWSFLGQLGAALVVAVALALAERQDDEHLVPAAIRYYASRRWRVLYGGARGDRFAGHPLEGLVEGGPWPR*
Ga0131092_1000172731	F066913	GGAGG	MKRRYLAVVVTVLLLLGPRSSSADPTNWAQLAQIIAWLQQIDQTLAQVNGFVEGIKTALADVYPNDVLRQIEIVLEPVDSIRTEVAKLACNWRFTPRVEQLRLALFQGGTFCRRDWNALFGAPTLTADWDLEHYYDWSAVRRLNLIRTRYEKGPERAAQAAWLAQEAIQGRDPLDGGQPYSPGYSQRLSALAAAELGNVMVETGDTQTAMLELDQEALNDKRRKRLLAHESAALVYLDMARRGQSQLQAPVELGLLGDRP*
Ga0131092_1000172733	F045207	N/A	MKGFDVTQIIQSQPVLEAVLKARDIGRLLAGIEALLLAFVCWYRIHAGAPWITVTKDWFFGIFVCAYVLTTAGTAAGLERWLWEVGVYLGHQFSPSQGFLMENFDRAVGRHGELMLWLQKIVPTLGDDERRLVEAVAWQFSSPFVAGFVGLNAIAIYLMKMVMQVSYAWLISFYWMLTPMVAPMVILPQTRGVFVGWLKTYIAIALWPMFFAFAERLALAIPWSAWLGEFDGAVSSWDMATSWFQGEFMLLIFNITFFFVYLSIPVASYLIVSGASRPFRAM*
Ga0131092_1000172739	F059117	AGGA	MSASDSRFIAIWASHEARAKLWFRLFLLASAGLAVSLVTTIRVWNRPREVIRIGCDGIPQVVRLDNASYSEPNEREIRAFATEFAVFYARSDSYSILNDLVWCANRMAPELRERFKRSVRGTPQSPGLIQVIEKLHRRTQIDPATLEIHVDKGPYPWKVQIKGVRQVVGDQTPGETFELALDLVRASREEQLDGLLVWAIRAKGDPIETVLAAVGAEGSRVP*
Ga0131092_1000172741	F035236	N/A	VNLLLGLPFIALVWGLLLPLLFLDGAQAYLAFLWKNPRVVAVLVLNLGVVSYWLGRRLSQALLLRATGAKLRATHEPP*