NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131092_10000014

Scaffold Ga0131092_10000014


Overview

Basic Information
Taxon OID3300009870 Open in IMG/M
Scaffold IDGa0131092_10000014 Open in IMG/M
Source Dataset NameActivated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)372322
Total Scaffold Genes326 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)228 (69.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Community Analysis In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location NameTai Wan
CoordinatesLat. (o)25.0Long. (o)121.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023723Metagenome / Metatranscriptome209Y
F026427Metagenome / Metatranscriptome198Y
F027223Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0131092_10000014256F026427N/AMPDLTRMPRDLEAALSGEGFRRRRRLVVPFLTTDPEGFPRVALLTLGELRASSTSRLSVAVMAGSRTAFNLVRRGTATILYLHRRVTASIQTRAGRGRVSSSDPARRIFPLAVERVRLDRPAAREGDVSLLTGPTFAGPDADRLFSDELFAELGKAARA*
Ga0131092_10000014279F023723GAGMAERKTDPPASGKASRKLKPEQYELKIRWEKARQVLDVSPTGVRFDFDTPLKVGTKYPISLTAPGVSFSTTLEVSRCQLTVEPPSGRFFRVTGRFFPYVE*
Ga0131092_1000001493F027223GGAGGMSRKSLSRTTAQALGPLVVPLVTKVALPIAIESLRRGGRFDTDRFYAEAKESLARGLKKSRPELDDLKEELTDRGTDLYEDLRKHGADLLETLTEKSSSLAEGWMGRARPRRRFRLVHALGILAVVGIGVALVGRR*
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