NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130016_10008217

Scaffold Ga0130016_10008217


Overview

Basic Information
Taxon OID3300009868 Open in IMG/M
Scaffold IDGa0130016_10008217 Open in IMG/M
Source Dataset NameActivated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17848
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (38.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location NameTaiwan
CoordinatesLat. (o)25.0Long. (o)121.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056466Metagenome137N
F082059Metagenome113N
F102386Metagenome101N
F102942Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0130016_1000821718F102386N/AMIHMKTILFLTVSMLAIAGWSQSADPASKVPLLSVPLAAPNTNASAETFKPLARLNELPSPSAMPVATEPFKTLPRLDGQPTAGKGSPEQMAKQGAQVKKMLNLYKTPEGRVQIAELMTVIQLANQQPEVRAKVDEARKLVHDYIRRVAPELLPTLETMNANRETVRQNKQATDMVY*
Ga0130016_100082172F056466GGAVKRYYLILSRLSLAVIILQALIFLHSGLKVEKFNRRIDQMVLDLSQKPPSDPALQPLYREAGARLAQLQQHNREHQWLLKAILLGGLLHVGVCYSLYIHFLRMGYTWTKIFLHANNLFISLLLPSPAGLAWMLAYIIGTRVYKHWCVAFTFSKPCTET*
Ga0130016_100082174F082059N/AMKIGRSRQVMVVQMPLVDLGCLCLLPDFRQLMARFPQHIKVNMFFPPYRLALNRQVVPFVLATGNGAPILEKLRRSLRASLGQHPMRPIK*
Ga0130016_100082178F102942N/AMKERTWLNKSTMKTRMFFAVTLGVQLLLGATSSYGQTSNRPTAVLKRDTNVSNVGTNRSQEAANKGADTDRDYLIQIRNQAVQCAANAVVATNSAPIEIGNLEWTGQYAERFLRIPEGNSGKPKLVRFLIPVYREKSTKPEASVGTEDKREQDRRVTETSSTKSG*
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