Scaffold Ga0130016_10000405

Overview

Basic Information

• Taxon OID: 3300009868
• Scaffold ID: Ga0130016_10000405
• Source Dataset Name: Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94901
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (43.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location

• Location Name: Taiwan
• Coordinates
  • Lat. (^o): 25.0
  • Long. (^o): 121.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044275	Metagenome	154	Y
F046149	Metagenome	151	Y
F061699	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0130016_1000040575	F046149	GGA	LPRETGLIHGKHKRMSKQVLLNQAVLEFHGPGSLPRGITRALEKKLGRADWTELLQPVLQGIPATIRVEDASGPGRTRNKPTKARRSRKKSNFCVEITRIGYGSKTFEISDVTAEEAERIALEQAGNREFTEKNSEYEVQSVSESIAGFKRKYGRRPGAF*
Ga0130016_1000040582	F044275	N/A	MADRFPIRYEIGGKITAAVLDRLLRQLLDIQMTREYGGCDDEASLHKEVERISGTSSLQVCNNDLAPYLTEELDLFLMEHKLPFVKRTDARHEYDGQIEWWRPGMKHLGKWEFTNTEANAIHISLESLKKALEQRKTLRQVVAELEGVAPDPGPVILLPPTSKKRGACRRARSSHNDANKTNAL*
Ga0130016_1000040589	F061699	GGAG	MDVSAPKQPRVFLTAHDAARSVRGKWHEWRAAGVWLSRFHKPRTAFVLPFDPDDYLWAGPVTLKLEIPEGRELFYRRGHYRRGVRKYLNQLKRGEKLPPVVLLYHEAWDWTMQDGNHRMEALITHRAATYEAFLGKPKRRKPIDEF*