Scaffold Ga0130016_10000050

Overview

Basic Information

• Taxon OID: 3300009868
• Scaffold ID: Ga0130016_10000050
• Source Dataset Name: Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 256271
• Total Scaffold Genes: 270
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 174 (64.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location

• Location Name: Taiwan
• Coordinates
  • Lat. (^o): 25.0
  • Long. (^o): 121.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026166	Metagenome	199	Y
F032646	Metagenome / Metatranscriptome	179	Y
F095434	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130016_10000050105	F032646	GAG	MRVALLSLVLLALAVPAAFAVASPAGSLSIEDGRGSVVLKGKGIVIGRLDQGEVKIVDLSPLDQWSPRVNGVPRGRTVWLRGKDVNFYVPGGRYRITVRGEGFSISARGQGAVTLSGRPDVTGATGTYAVGDDAAAPIPLLGDPVVFGAPLLDTTPAKADAP*
Ga0130016_1000005022	F095434	GGAGG	VSDLPAPPHAYRGSAILDGVLALVVFVVAATSGGNVAKAVLVAIAYFVVATGWSWFRYRRRRPRATGSPDAAGNGRRHS*
Ga0130016_10000050229	F026166	GGCGG	MPRPERPSDADYYERDRVELVSQGDLFRDVPLAYPLPAHELLVDGASGGRRFLTGPLAFGPAMLITPSCSIGAQGAPGYGHPVRTLVPVIPLAQLIDHGVVKETALADLRRFDHLINYMYLPPLDINELDFSMPESAALLYMPVTLHHAFLEGQRVSQLAYRGAQQLQRKLVWFYSGWLEDNLDVFDPPMD*