Scaffold Ga0131850_1013599

Overview

Basic Information

• Taxon OID: 3300009854
• Scaffold ID: Ga0131850_1013599
• Source Dataset Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 78 mira
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1761
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088555	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0131850_10135992	F088555	GGAGG	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQGGQPGTYQTNLQLPDGDYKTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*