NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131850_1003185

Scaffold Ga0131850_1003185


Overview

Basic Information
Taxon OID3300009854 Open in IMG/M
Scaffold IDGa0131850_1003185 Open in IMG/M
Source Dataset NameCompost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 78 mira
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCenter for Advanced Technologies in Genomics, Sao Paulo University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4190
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location
Location NameSao Paulo Zoo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059782Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0131850_10031852F059782GGAGVRVEFETARGRVVPGKGSQVAAFFVALGIESEQLTVPERGELLQRLTTRIVDAIADEFGGEEIEVRRRHE*

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