Scaffold Ga0131850_1001360

Overview

Basic Information

• Taxon OID: 3300009854
• Scaffold ID: Ga0131850_1001360
• Source Dataset Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 78 mira
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6984
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088555	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0131850_10013606	F088555	GGAGG	MALRMYFDETVSSLVRDDISPTLGSPDSYEGPGAGGTVERXLYIYSDNFQRTYSQVQLTSLNADAQVQLHYALDDNGSPGTWQTTVDLPDGDYQTPYPIWVRVTFAPTDEPTLRTDLRHWLQWLEAIAG*