Scaffold Ga0132158_109494

Overview

Basic Information

• Taxon OID: 3300009845
• Scaffold ID: Ga0132158_109494
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, 3m depth; RNA IDBA-UD
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 628
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F091921	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132158_1094942	F008943	AGGAG	MKFDGFGWVFLTIPIFIIVAAAVLTYDAQQERALFQQTYNKNLECRQALKDQTVVRVNEICGDVPQIKDFTGGNRND*
Ga0132158_1094943	F091921	GGAGG	MIELRIVENEMGMKPDIQYRFMLFSVGQGGYLCPPNPDMKWSEWKTAEILGKWVTVEEIEND*