NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126313_10068550

Scaffold Ga0126313_10068550


Overview

Basic Information
Taxon OID3300009840 Open in IMG/M
Scaffold IDGa0126313_10068550 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2545
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8722Long. (o)-122.4269Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001264Metagenome / Metatranscriptome735Y
F002864Metagenome / Metatranscriptome525Y
F023048Metagenome211Y
F026817Metagenome / Metatranscriptome196Y
F036565Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0126313_100685503F001264GGAMHPGQTVGEMAKEVLSRQVSTHARRTGQSLAEARVAVYQTPAGHQLEELRGGPHQHEEARYWQANLLFERVSEQAGHPASSSHLASDA*
Ga0126313_100685504F026817GAGMNLGYDLCEVRSDLSAEELWNVEKYFREQDVSEFVYDEQLDVLRFPGDGRFAFCQEFADWERLQELGYLHF*
Ga0126313_100685505F023048GGAGLKGDVTHWLTDPGYAALRHRLEAAHAAVEAALVEARRSVRLNEG*
Ga0126313_100685506F002864AGGAVSGQEPVRIPKEVLEELESVRRYTRAEVLDIPTVRHVAMETHKPALVVWLDKHEQEYGQGLLNGFLAED*
Ga0126313_100685507F036565GGAGGMDFDFPAPYDEEVPRRIGEVRHQLSPEGVAVLEGIIDESGSLEDVIVAMESLPSSDRHVLVSLSRFFAEAYDARMRESEGWADLQRHLAALIVRARELEPSLR
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