Scaffold Ga0126313_10036181

Overview

Basic Information

• Taxon OID: 3300009840
• Scaffold ID: Ga0126313_10036181
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3419
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8722
  • Long. (^o): -122.4269

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000972	Metagenome	817	Y
F030872	Metagenome	184	Y
F050650	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_100361811	F050650	AGAAG	MIKIGIEVRSSAARFKVVLVAESIEGALEMAKRYNPGKKCKVVFPIDPESFFVENDLGRGGVVGKIAA*
Ga0126313_100361814	F000972	N/A	MADEDTVLEEAMANLKEAGQRIRVTQSLMRSQGMTDGENHRDLLTRLSTALAMTEAAYLEARRRRDL*
Ga0126313_100361816	F030872	N/A	VRCAGTKRDNSPCTATVEPPKRYCWWHDPGNADKRRRAASKAGKSKPSRELAGIKQRLSDLADDVLAGEVDRAVAAVASQVLNVYLRAVSVELKIREQQEITERLQELETLLEQQKGERRYGA*