Scaffold Ga0126313_10024467

Overview

Basic Information

• Taxon OID: 3300009840
• Scaffold ID: Ga0126313_10024467
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4063
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8722
  • Long. (^o): -122.4269

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000756	Metagenome / Metatranscriptome	905	Y
F002196	Metagenome / Metatranscriptome	584	Y
F003251	Metagenome / Metatranscriptome	497	Y
F050186	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_100244673	F050186	N/A	LNEHQAHDHEGAPVKPGDQKARYAGLGVGSNLYRAAMWWLLDVGALVPVEEANEQLRNAVGAQHRSFAFKITRHGLNMLRGV*
Ga0126313_100244676	F000756	AGGAGG	MMDRERPSAREGRIPEAWIGQEVMLETTEALSSDLRAAAPVYLEDVNDRGVVMLVTRHHDQSQFSRYFYPWSVVGWIRLAEEDERSKPRSKGS*
Ga0126313_100244677	F003251	AGGA	VQTKTYTTETAAKKAAVRAYSPAIVRLANGRYVWSHGGHRLPQGAHTVSRWGMNQWRAYE
Ga0126313_100244678	F002196	AGGAG	MYRTTEDARALLRAAQEIHAERHGTQTFGLGTHLPLEAAGQRTGIRPNSIRYHDAIEELEYEGAIEWPTSARYARGDKHYGITQRGLDGAE*