Scaffold Ga0126313_10007348

Overview

Basic Information

• Taxon OID: 3300009840
• Scaffold ID: Ga0126313_10007348
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6734
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8722
  • Long. (^o): -122.4269

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001264	Metagenome / Metatranscriptome	735	Y
F003229	Metagenome / Metatranscriptome	499	Y
F009555	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_100073483	F003229	AGGAG	VQYHHDQPTTIAILGCDTVVGRSLSVLLESHGYNTVLLDSHPTGVVDELLDGAHLLLLTPRVDQDVREAFLGAVGKSTPQKADIPVIALYTATDENLPQNEGLFTVPWPCETKLLVEQIEAALPTSAASTAPTTQAETG*
Ga0126313_100073486	F001264	AGGAG	MRAEQTVNEMAQGVLLRQARTLAQRTGEPLVVALEAVLETPAGRQLEELRSGPHEEEEARYWQANLLFERVSEQAGHPVHPV*
Ga0126313_100073487	F009555	AGG	MVQILQRINAHYESREMPFATVYEWHPASVDLECDCGEKVTLSATSSSTTCSGCGAELGTFVHDIREREATLPEDLTHPWFYDARERAQQHNHDEAAYLEGSGWRYNDITAATNEE*