Scaffold Ga0126313_10001911

Overview

Basic Information

• Taxon OID: 3300009840
• Scaffold ID: Ga0126313_10001911
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11318
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8722
  • Long. (^o): -122.4269

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000972	Metagenome	817	Y
F072963	Metagenome	120	Y
F077995	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_1000191118	F000972	N/A	MAEEDTVLEEAMDNLKEAGQRIRATQSLMRSEGMTESEDYRDLLTRLSTALAMTEAAYLEARRRKDL*
Ga0126313_100019115	F072963	AGG	MTRTPTLPLEDRSMWRRLVGRAHPDAGGDHELFIWTVATRDAICGRELGVEIPRRDRQEQPSQRPETSNSSVGECIPFDEDALLEMLTDRALSMAEAVAEPYGFLLRQVADCYPVSEGSLHDQQRRGASYKSLAAIGHQVGMSKAERVQWYKVAEAIPLSQRHAGHILARLKRRAA*
Ga0126313_100019119	F077995	AGGGGG	MSRCRATKANGEPCTLPANGKQGFCWAHDPATAEQRRRRAQRGGRAKGNREVSTLKEEIKTVIADVRAGDLDRNDAAVMIQGYRALKDFLALERQVKETDELAAEIEELKREFGVA*