Scaffold Ga0116223_10130706

Overview

Basic Information

• Taxon OID: 3300009839
• Scaffold ID: Ga0116223_10130706
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1570
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F016632	Metagenome / Metatranscriptome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116223_101307061	F002761	N/A	MVWAGLGKLNELARFVGFKRSKPRESALRWINSHKVITLTATEVVNYSVHGITSPLGVTFALGGTLVNAFVVMFVVP
Ga0116223_101307063	F027079	AGGAGG	VIRTFLNLCLISFLNTLAYMVALVAAFAVAWAAVCGARWIFAALQNAVIALWPRRRKKEIYAHATR*
Ga0116223_101307064	F016632	AGGAGG	VTGILELFALVELGSAIGFLASWRNKVLNAKVNFFRQPNNRPSPYDKVLRGKVGRAVSKQDCLRLQLADGLVDLIRKLVQYEAFRQVVHGLALAHSPMRQALRKKGGRPW*
Ga0116223_101307065	F003859	AGGAG	MDEPNAEKDTSLKCTSTPGRSWPGASLYKSLKLGWHWRRLRWAIVAASEAAQGHEANGLPPGSREFKTLFDEVVRKVQEYSTDSGDPLDTLQARLPALCALERLANPAPTVPRNKAGLTLGVVLAALLGSLGMGALIGLGTGMAHWIAHLFA*