Scaffold Ga0116223_10090161

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116223_10090161

Scaffold Ga0116223_10090161

Overview

Basic Information
Taxon OID	3300009839 Open in IMG/M
Scaffold ID	Ga0116223_10090161 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1949
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F080330	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116223_100901612	F080330	AGG	VKKTAPFILSLFAAGTVLAGDPFSGPDANQSGLADGVRLSARVVENVYLMPEQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAQGDVDMHVVLEGKTYTFRLIVGRDKVNYRKTYTAEGGGSGRSLRKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDIGSSPQGATYLWDGAEVVLQSAWHYYPQDVVILQVEVHNPTSRAVYLSATQLDPFIANTTLHYLLTQQGTKVLLPGQTDIKYIFLQGCGVDIEGARFELRLPAAGTQLNAQPQQNP*
Ga0116223_100901613	F037652	N/A	MDPIPYTHFWSEEPETQRRAWRPTDEVRRRLMRLWIIQALLLAAIVLVAGVLTRESKRVPPIYAKLPNGVVFETTTGDLQMDRLARTELVNNVLQILYYQQGSFNYLETVRQNVKPQLLGRFRAEMQNASQQTNSTVYLNVVETFEALNVPAKGFDAVTKGVLSKRSNQESASAPIYIRTRWLLSGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSKPELERELGVRKNQEIPLPNRNHLF*

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