Scaffold Ga0116153

Basic Information
Taxon OID	3300009838 Open in IMG/M
Scaffold ID	Ga0116153_10001053 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009838 Open in IMG/M

Scaffold ID

Ga0116153_10001053 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28328
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (75.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

28328

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (75.47%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	40.3	Long. (^o)	-88.15	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA

Coordinates

Lat. (^o)

40.3

Long. (^o)

-88.15

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047561	Metagenome	149	Y
F058970	Metagenome / Metatranscriptome	134	N
F080092	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116153_1000105312	F058970	AGG	MIVTDAGLAYFAKFFNDQETTAIINKIRIGSSQTAEAASQTDLVTKYTDLGFQEATASTIEYADGKLHLQKVFTNGATVDREVWEVGAFTSAGDCICRHVYLPYEVANNNTVSPGQTITIDIYIELIPDDDITYTLTETGSPVTHEYLLEGSIVVSATIGEDPIDPSAYTCERGKICFNGIVLPNASPPVVTESRGGKIWNIKCATQDYTQVTRLVTKQGLVNVGVSVTGYQYATSLQRYGTLKIWDKTNQTHTSYNNCLISGPVNVDTFGLWYLFDLTIIQSYYGDL*
Ga0116153_1000105325	F047561	GAGG	MVNSNIEPQTITPDFGTLKRGKLDILVNWGITSATKLDDMGNEYTEWQYESVRINWVLPAVYESEAAIQSYLDANYASGENILGWAQATKTSI*
Ga0116153_1000105349	F080092	N/A	MKYIIIAVLAVFFCLILCSFPSSAVISSSAYSNGGSIILNSEECYETSNDLMRFGTSNDSYLYNGKSQTIVSLGRTGVQKTDTTRVETLGMLNAFDTVGMFATQTNSPETPCDENNFLINGTDSSRYPETQTAEGMWGLMGSGPGTTYESEIVTNGKTVGASVQGTTPQGYLYEDAYGALYAGLNKSETILQYSYYRHDHGLLSSDENKSLDAGYDWLWDTSAEEIVNDTPANETGNETVEGANS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116153_10001053

Overview

Ecosystem & Geography

Associated Families

Sequences