NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105058_1056866

Scaffold Ga0105058_1056866


Overview

Basic Information
Taxon OID3300009837 Open in IMG/M
Scaffold IDGa0105058_1056866 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007651Metagenome / Metatranscriptome347N
F054450Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0105058_10568661F054450GGAMHKFFYGNNPRSNKHRPTPTLRPVNISKEQLKDFRDLVLNPRTSRDIKKRFMVEKAGGY
Ga0105058_10568662F007651N/AVLEKDIDKITLVVGDMFICYEIIVIIMSNDLNELITRKDKLEGELNHELSADYNELMKKMSESFRDMHENSVQNYKQKANEELDKMEKNIQSGNKLSAINE

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