Scaffold Ga0130087_1055698

Overview

Basic Information

• Taxon OID: 3300009828
• Scaffold ID: Ga0130087_1055698
• Source Dataset Name: Sorghum rhizosphere soil microbial communities in Albany, CA(condition:control)- sample E
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4316
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Source Dataset Sampling Location

• Location Name: California,USA
• Coordinates
  • Lat. (^o): 37.887207
  • Long. (^o): -122.304401

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055349	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130087_10556984	F055349	AGGA	VSFTISSPVTGGAQTSLTSPTYTLVADVAPNSAGKQYAVSAIGGTQTGVDTASTPSRPFTITGSRPQNLRALSVVDPVTGVLRSVPRNSYKFIVRKGVTPLSGQASVPMVLTLTMDVPAGAEVADAPNVRAALSLLLGALWAQSSTIGDTLITGVI*