Scaffold Ga0123355_10031711

Overview

Basic Information

• Taxon OID: 3300009826
• Scaffold ID: Ga0123355_10031711
• Source Dataset Name: Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8574
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005077	Metagenome / Metatranscriptome	413	Y
F008059	Metagenome / Metatranscriptome	340	Y
F037853	Metagenome / Metatranscriptome	167	Y
F049049	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123355_1003171110	F008059	GAG	MTTPRAGDLVTNAAERLAHEEFERAEKRRLELAEQRSDLNPPDIRIRTWERIHELRMPSDPAHPILDVIALGTGLTLEQVREEQRTRATRRAR*
Ga0123355_100317117	F037853	GAGG	MRALIAAQVASGLVAGLSLGPKSLDDEVAAIAETAVRIAKAIHDASVKSVQIR*
Ga0123355_100317118	F049049	AGG	MARSRKPPSWSPVAIERDGKPYSGKFLVDGRRITVLYNGRTKTTPLGGSDAIAIASRLLSELLPEI*
Ga0123355_100317119	F005077	GAGG	VKLAALARARKEQMEQSRRDRATAPMLRTAFPTLLHLRIEFRFQGSGSSAPTSQTHLLYPPARAFFEYQCPYSDCDGQFSLDGAVRAALADATHRAEGVLECHGSRGQDVASRRACLLQLTYKVTPTYQQPG*