Scaffold Ga0123355_10021361

Overview

Basic Information

• Taxon OID: 3300009826
• Scaffold ID: Ga0123355_10021361
• Source Dataset Name: Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10358
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093269	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123355_100213618	F093269	N/A	MSGRRSKGVWRIAALPGSSPPQAIGKAVMRTRRLLVSSFVISLAGGQAENAAAAEAIMLRAGEATGPNAVFAFDKAKPHNIVVRTTQVGVAGSRIEVFVDKARRPAFRHLFAADECKFGDSGSRCEVIIPSSSPAYAMILAQFRRGRVARVTVDDAGAMKMDQRASLAGFTKSLR*