Scaffold Ga0123355_10000273

Overview

Basic Information

• Taxon OID: 3300009826
• Scaffold ID: Ga0123355_10000273
• Source Dataset Name: Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66142
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (61.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000534	Metagenome / Metatranscriptome	1044	Y
F001318	Metagenome / Metatranscriptome	724	Y
F019104	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123355_1000027332	F019104	AGGA	LSRQKQAFLTALVLVAFALVSFAKTQKLNGKIVAYDLLKHNAKNSSALQNQEVIVLQTPSQKQKYVKVTFSSFGTTQIEPKYFDGNVPLSIDVFRDKNCDEKLPTFVAQVKLEQTAGTYLLTDAFKSTPPGRIKILECYVAIQKKK*
Ga0123355_1000027351	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDALVVGEKSEAEVQESVRRWWALIHPADRPIAQKYLLMVLGRSNSALDAMSTELLTVSGCEVAASRIPEAPLPTKRMRLIERTIKENPVRTAF*
Ga0123355_1000027352	F001318	GGAGG	MKKWALILAVLTVISTAGAQTGASANLQESDAGSQASWHEAGPEDRMFFPRDMLWGWAQFDLAPPHNEIDPNQCAGNSYVYGGANAPCNLFARYMISGILEARPFGRGPLRRFMVYGAPSFLFGKNVPKTFYTWSPDAIGIEHSWGGGIYIGKGYEFRLTQHFLFDRLGARNKNLGPADLGTNGPWGRYFSVGVRKTWGTRRW*