NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105072_1118992

Scaffold Ga0105072_1118992


Overview

Basic Information
Taxon OID3300009818 Open in IMG/M
Scaffold IDGa0105072_1118992 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037290Metagenome168Y
F088453Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0105072_11189921F037290N/ALSRDIQGSITAMSVRDLLTFNLFLQFADGLVSYQAFALGAAEANPVVAAAIVNWGMIWGLIYNKALACLLLLLIFAFRSSQRLLAMRALTVTASVYVCATI
Ga0105072_11189922F088453N/AFKEPGNMSEHKHGTHLIKFKADRTSDGNYWIGKAHVQYNHGKIGRCFEVHGPAGKFDSKEAAEQHVLGLAKTLIDNFI*

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