Scaffold Ga0105070_1030939

Overview

Basic Information

• Taxon OID: 3300009815
• Scaffold ID: Ga0105070_1030939
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 957
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006289	Metagenome / Metatranscriptome	377	Y
F049538	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105070_10309391	F049538	N/A	LGVVGIALGALNVVRGAAGPHGIPFSFENYGGPGSIIAGLMLVAGSLYLRSIWQERK*
Ga0105070_10309392	F006289	N/A	MCEVRDVMPLLRSLLKTLDELRSHHRRRLSFLDPPIERRRPRILMEDYAARHSIEHTLDRKAELRRLAPTRPEAAARYHQLLTYELEGLREVMTTLQATTGGRDLLECLAENKVEIERLEIEVAWCATLLPPPSDPRPR*