Scaffold Ga0105056_1000280

Overview

Basic Information

• Taxon OID: 3300009801
• Scaffold ID: Ga0105056_1000280
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3447
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009924	Metagenome / Metatranscriptome	311	Y
F014660	Metagenome / Metatranscriptome	261	Y
F018679	Metagenome / Metatranscriptome	233	Y
F066550	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105056_10002801	F009924	AGGAG	MTVLEALATLESATLECKQRDIDTPEVREALTLLEPHIQPEWLIPQFRYHVQRYGQQHWWELEAQRQVLCAIFPRIRESVKELIGKQMAALARNFAATHNMKVKDEINLLAKEYGKLGEPWGFVAS*
Ga0105056_10002802	F018679	GGCGG	MKSAIKMAWDHGGADFQSRFDKSTAQAAEMKEGALRVL*
Ga0105056_10002805	F066550	N/A	VDEEGIAMDETRIYSVDFETFNELSHANDELIQYLQWLITERKDLEAINKLSPIVRRMTDLFLAILEGAFPEISHVVDAFNKRRDEITERIARASTPEEIEQLSKQVDELTSDCQKRINEVMAETKRLEKQSRKQ*
Ga0105056_10002806	F014660	N/A	MHLKRGKRKDVLFMEEQYKGHVIRVTTEKDEGAYPWKPICRIMYQRSRELIKQLDWDIGYDTPDQAEKVGLLISKKWIDAGKPNL*