Scaffold Ga0105075_1000005

Overview

Basic Information

• Taxon OID: 3300009799
• Scaffold ID: Ga0105075_1000005
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17796
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (46.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007651	Metagenome / Metatranscriptome	347	N
F013352	Metagenome / Metatranscriptome	272	Y
F054450	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105075_100000522	F013352	N/A	MNSTYAQIEVTTDENLSSPLFNRTVSEDAEPKPDILYSALHSDTIVGEVLNNFTYPIEDVRITASVYDKNGVLVATGQTYASDYHIKPGTRSGFDIFLDEKLPNNSKYTLTSTFEESDVDKPEALQLSVDRNSKDSNSFRLLGEVLNKGQVDAHSVKVSGIFYDKDHKVMDVDYIYTKPDIISPNKKAPFEFSFYTDNPKQIKSIGINVQSDEYSLITNTNQNNTESRP*
Ga0105075_10000058	F007651	N/A	VLEKDIDKITLVVGDMFICYEIIVIIMSNDLNELITRKDKLEGELNHELSADYNELMKKMSESFRDMHENSVQNYKQKANEELDKMEKNIQSGNKLSAINEKLLADTYLS*
Ga0105075_10000059	F054450	GGA	MHKFFYGNNPRSNKHRPTPTLRPVNISKEQLKDFRDLVLNPRSSRHIKKDL*