Scaffold Ga0105189_1001715

Overview

Basic Information

• Taxon OID: 3300009794
• Scaffold ID: Ga0105189_1001715
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2137
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -9.4986
  • Long. (^o): -25.9999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F009559	Metagenome	316	Y
F039389	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105189_10017151	F009559	N/A	MNQVLLYTSVILASVSFFLCLYACARVGKLLNSVKGLDWDTIATLTGDIGTIKKSIQTLNNRINGLNSP
Ga0105189_10017153	F001611	AGGAGG	MPLVQKTLTLAAGATSDNILADTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYLNNDLLTTGSQRNRVLIRFTNDTSATRTIRVGCFIGG*
Ga0105189_10017154	F039389	AGGAGG	LAFLGDIGKVFGLGSSKQVLGGFGETVGNIFGVGGSGRRLGEVVAGATSNLAGGTADQPSEQSAVPTPGQNGSAQETSRSGSTTTNVIDVSGRTPTQQAGLGMLTPFLPQIAKIFGNRAVQTGLGAGAGIIAGAMGQNGREKPVLTQSRRNKARVRQLVNFLGIEGTAEFLTQQGGISVTPNDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEAVSMAKTTRRASPMRRASSTTLIKN*