NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105189_1001480

Scaffold Ga0105189_1001480


Overview

Basic Information
Taxon OID3300009794 Open in IMG/M
Scaffold IDGa0105189_1001480 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2302
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-9.4986Long. (o)-25.9999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F004882Metagenome / Metatranscriptome420N
F013311Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0105189_10014801F004882N/AVPALVSGQPFGVLNGSYLNNDLLTTGSQRNRVLVRFTNDTSATRTIRCGVFIGG*
Ga0105189_10014803F002374N/AMDQVLLYTSVILAVVSFFLCCYACARVGKLLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKNNIGG*
Ga0105189_10014804F013311AGGAGGLAFLGDFGKFFGLGSSKEVLGDVGGSIGSIVGLEGAGRKAGEFIGQATSSIGGGSNVNLSPLSTADQALEQSAVSVSQRGDLPQETSSNLGTTGAPTMQAGFGALPQAIQGIRALGPQIGKFFGGTTGAVATGLGTGVAVNMLSGSGMSKEKPVLTQSRRNKARVRQLVNFMGIEGASSFLSQASGVTVTPNDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPIRRASSTTLIKN*
Ga0105189_10014805F001611AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATSDTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGSYLNNDLLTTGSQRNRVLVRFTNDT
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