Scaffold Ga0105189_1000845

Overview

Basic Information

• Taxon OID: 3300009794
• Scaffold ID: Ga0105189_1000845
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2980
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -9.4986
  • Long. (^o): -25.9999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F085551	Metagenome	111	N
F088743	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105189_10008454	F029713	N/A	MTINHHEESLKAAKRAEIERLWFAEEATNKDLVEAYKSLDIKKEDV*
Ga0105189_10008455	F088743	N/A	METKIKDNEQAYLHALVLAVTAPNDALSLECQHIAESIGSQLTEKQRDLCRKGVEVCMELLK*
Ga0105189_10008456	F036656	GGAG	MKLCTNQNIPVEYLKGACIFLSEEDEGRYIKDVCVDLEKHSIILVDDDGCGLYWESLRNASIQFQGGR*
Ga0105189_10008458	F033766	AGGAG	MSDYPYSLNAIATHLRELAQSIAKKLDISEEDAWDLCIEKLEYKFSSMKREDDQ*
Ga0105189_10008459	F085551	GGAGG	MSYSIKTRLHHWIEQCPCTNFLVKNKKEQEQVDGIWYDVVVVECLVKAEEQP*