NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126374_10249425

Scaffold Ga0126374_10249425


Overview

Basic Information
Taxon OID3300009792 Open in IMG/M
Scaffold IDGa0126374_10249425 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008844Metagenome / Metatranscriptome327Y
F011441Metagenome / Metatranscriptome291Y
F071916Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0126374_102494251F071916GAGMGADMKSHFRAGAKVCSMAIMVLLVIGALGPPNWTPRTALGWQIDHFVGYFAITLLVCFAWPRPFLVGGFLIAVAFLLEGLQDFTPDRTANLVAALCGAGGVVAAALLAELCSRAWRWRL
Ga0126374_102494252F011441GGTGGMGLDTGTVFKRSVLCPHCNEDYLFTLRAIADNPELKCHGCGGSIRLGDSVYKPLLSEVRNTLEAVDTAQLTPTFVSVHSSSPSNSLP*
Ga0126374_102494253F008844N/ALAQELSVQDRACITAAAAKLPPVTALKIEGSRVVAQPSAQGQRNSKLYHVKVEIDASVAGQTSTYVFNCVRDGQLTIVQPIGMR*
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